Clarity LIMS
Illumina Connected Software
Clarity LIMS v6.3 & Lablink v2.5
Clarity LIMS v6.3 & Lablink v2.5
  • Release Notes Clarity LIMS v6.3
    • Release Notes Clarity LIMS v6.3.1
    • Release Notes Clarity LIMS v6.3.0
  • Technical Overview
    • Technical Requirements
  • Installation
    • Installation Procedure
    • Guide to Secret Management
    • Install/Upgrade Secret Management for Integration Modules
    • Change the Clarity LIMS Hostname
    • Update Server Passwords and Database Connection Details
  • On-Premise Deployments
    • Pre-installation Requirements
      • Install a Purchased SSL/TLS Certificate
      • Configure Your HashiCorp Vault
    • On Premise to On Premise Upgrade Procedures
    • On Premise to On Premise In-place Upgrade Procedures
    • On Premise to Hosted Upgrade Procedures
    • Hosted to On Premise Upgrade Procedures
  • Administration
    • Database Cleanup Procedure
    • Backup and Restore Procedure
    • Receiving and Decrypting Cloud Backup Data
    • LDAP Integration
      • Using the LDAP Checker Tool
    • Illumina Connected Software Platform Integration
    • Clarity LIMS Log Files
    • Customize the Term Used for Projects
    • Enforcing Unique Sample Names Within a Project
    • Container Name Uniqueness
    • Configure Electronic Signatures
    • Creating Enrypted Passwords
    • Config Slicer Tool
      • Managing Configurations with Config Slicer
      • Upgrading a configuration package/manifest file for compatibility with Config Slicer v3.0.x
      • Config Slicer Use Cases
      • Troubleshooting Config Slicer
    • Audit Trail
      • Enabling, Validating and Disabling Audit Trail
    • System Settings
    • Automation Worker Nodes
      • Troubleshooting Automation Worker
  • Clarity LIMS v6.3 Reference Guide
    • Dashboards
      • Overview Dashboard
      • Projects Dashboard
    • Projects and Samples
      • Projects
      • Samples Accessioning
        • Sample List for Batch Import
        • Guidelines and Tips for Batch Sample Import
      • Assign and Process Samples
    • Lab View
      • Requeue and Rework Samples
      • Storing Sample Aliquots for Later Use
      • Modifying Completed Step Details
      • Alert Notifications
    • Configuration
      • Lab Work
        • Steps and Master Steps
          • Step Milestones
          • Derived Sample Naming Convention Tokens
        • Protocols
        • Workflows
      • Consumables
        • Reagents
          • Reagent Kit Lot Manifest for Batch Import
        • Controls
        • Instruments
        • Labels
        • Containers
      • Custom Fields
      • User Management
        • Manage User Access
        • User Roles
        • Configured Role-Based Permissions
        • User and Profile Page
      • Automations
        • Automation Trigger Configuration
        • Copy Custom Fields from Step Input to Output
        • Template Files Associated With Automations
    • Automated Quality Control
      • Configure a QC System
    • Search
      • Basic Search
      • Advanced Search
    • Genealogy View
    • System Performance
      • Queue Performance and Usability
      • Demultiplexing API Endpoint Performance
    • Terms and Definitions
  • LabLink v2.5 Reference Guide
    • Project
      • Email Notifications for Notes
    • Resource Materials & Contact Us
    • Users
    • Configuration
    • Publishing Files and Progress
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  • System Administrator and Facility Administrator
  • Researcher
  • Collaborator

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  1. Clarity LIMS v6.3 Reference Guide
  2. Configuration
  3. User Management

User Roles

Clarity LIMS users are assigned roles. These roles control permissions and the ability to:

  • Access certain Clarity LIMS features.

  • Perform certain actions.

  • Sign in to the Clarity LIMS interfaces.

In a typical LIMS lab environment, there are four primary user roles:

  • System Administrator and Facility Administrator

  • Researcher

  • Collaborator

The following sections describe the default permissions of the four primary user roles. Some user role permissions are configurable (see Configured Role-Based Permissions).

System Administrator and Facility Administrator

By default, both the System Administrator and Facility Administrator user roles have access to:

  • All configuration areas of the Clarity LIMS web interface, allowing them to:

    • Add and configure workflows, protocols, and steps.

    • Add consumables—reagents, controls, instruments, reagent labels, containers.

    • Add and configure custom fields.

    • Add and configure automations.

  • Supervisory and lab management functions in the Clarity LIMS web interface, allowing them to:

    • Review escalations.

    • Remove samples from workflows.

    • Move samples into the next step in a workflow.

    • Access the Overview and Projects dashboards.

  • User management, allowing them to:

    • Create, modify, and delete user accounts.

    • Modify user roles and permissions.

    • Approve access requests from external collaborators.

Researcher

The Researcher role is typically assigned to the laboratory scientist. By default, individuals who are assigned this user role are able to:

  • Log in to Clarity LIMS.

  • Access Lab View.

  • Manage and work with samples contained in all projects in the system.

  • Edit their own user profiles—ie, they can change their own passwords and other profile information.

  • Access three Consumables configuration areas: Reagents, Controls, and Instruments, and do the following.

    • View reagent kits and add new reagent lots to those kits (researchers cannot create reagent kits).

    • View controls.

    • View instrument types and add new instruments to those instrument types (researchers cannot create instrument types).

    • Reactivate expired (archived) instruments by resetting the expiration date.

Collaborator

The Collaborator role is assigned to external collaborators who interact with Clarity LIMS using the LabLink Interface.

The Collaborator role is supported in v5.3 and later. It is not supported in v5.0.x to v5.2.x.

An external person can request a user ID through LabLink. By default, when the request is approved by an administrator, the collaborator is able to:

  • Sign in to LabLink.

  • Create, view, and delete projects. (Collaborators are automatically given full permissions to projects they create.)

  • Submit samples to projects, and delete samples from projects.

By default, collaborators do not have access to the main Clarity LIMS web interface.

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Last updated 9 months ago

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