Clarity LIMS
Illumina Connected Software
Clarity LIMS v6.3 & Lablink v2.5
Clarity LIMS v6.3 & Lablink v2.5
  • Release Notes Clarity LIMS v6.3
    • Release Notes Clarity LIMS v6.3.1
    • Release Notes Clarity LIMS v6.3.0
  • Technical Overview
    • Technical Requirements
  • Installation
    • Installation Procedure
    • Guide to Secret Management
    • Install/Upgrade Secret Management for Integration Modules
    • Change the Clarity LIMS Hostname
    • Update Server Passwords and Database Connection Details
  • On-Premise Deployments
    • Pre-installation Requirements
      • Install a Purchased SSL/TLS Certificate
      • Configure Your HashiCorp Vault
    • On Premise to On Premise Upgrade Procedures
    • On Premise to On Premise In-place Upgrade Procedures
    • On Premise to Hosted Upgrade Procedures
    • Hosted to On Premise Upgrade Procedures
  • Administration
    • Database Cleanup Procedure
    • Backup and Restore Procedure
    • Receiving and Decrypting Cloud Backup Data
    • LDAP Integration
      • Using the LDAP Checker Tool
    • Illumina Connected Software Platform Integration
    • Clarity LIMS Log Files
    • Customize the Term Used for Projects
    • Enforcing Unique Sample Names Within a Project
    • Container Name Uniqueness
    • Configure Electronic Signatures
    • Creating Enrypted Passwords
    • Config Slicer Tool
      • Managing Configurations with Config Slicer
      • Upgrading a configuration package/manifest file for compatibility with Config Slicer v3.0.x
      • Config Slicer Use Cases
      • Troubleshooting Config Slicer
    • Audit Trail
      • Enabling, Validating and Disabling Audit Trail
    • System Settings
    • Automation Worker Nodes
      • Troubleshooting Automation Worker
  • Clarity LIMS v6.3 Reference Guide
    • Dashboards
      • Overview Dashboard
      • Projects Dashboard
    • Projects and Samples
      • Projects
      • Samples Accessioning
        • Sample List for Batch Import
        • Guidelines and Tips for Batch Sample Import
      • Assign and Process Samples
    • Lab View
      • Requeue and Rework Samples
      • Storing Sample Aliquots for Later Use
      • Modifying Completed Step Details
      • Alert Notifications
    • Configuration
      • Lab Work
        • Steps and Master Steps
          • Step Milestones
          • Derived Sample Naming Convention Tokens
        • Protocols
        • Workflows
      • Consumables
        • Reagents
          • Reagent Kit Lot Manifest for Batch Import
        • Controls
        • Instruments
        • Labels
        • Containers
      • Custom Fields
      • User Management
        • Manage User Access
        • User Roles
        • Configured Role-Based Permissions
        • User and Profile Page
      • Automations
        • Automation Trigger Configuration
        • Copy Custom Fields from Step Input to Output
        • Template Files Associated With Automations
    • Automated Quality Control
      • Configure a QC System
    • Search
      • Basic Search
      • Advanced Search
    • Genealogy View
    • System Performance
      • Queue Performance and Usability
      • Demultiplexing API Endpoint Performance
    • Terms and Definitions
  • LabLink v2.5 Reference Guide
    • Project
      • Email Notifications for Notes
    • Resource Materials & Contact Us
    • Users
    • Configuration
    • Publishing Files and Progress
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  • Requeueing samples for a Step
  • Reworking samples from a previous step

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  1. Clarity LIMS v6.3 Reference Guide
  2. Lab View

Requeue and Rework Samples

To requeue and rework samples, specific role-based permissions are required. For details, see Configured Role-Based Permissions.

Requeueing samples for a Step

Occasionally, a sample must be rerun through a particular step. For example, there may have been a technical error in the lab. More sequencing may be needed at the end of a workflow if there are not enough samples.

To solve this problem, return samples to the queue and repeat the step.

There are several ways to requeue samples:

  • Search for the step with samples to requeue, view all samples that have completed this step, and choose the ones to requeue. See Requeue samples from a completed protocol step

  • Search for a specific sample to requeue. See Requeue a specific sample

Requeue samples from a completed protocol step
  1. In the header, select Search.

  2. Select Protocol Step from the drop-down list of search categories, type the step to search for, and press the Enter key.

    Type the complete step name or part of it followed by an asterisk.

  3. In the search results list, select the arrow to the right of the step name to show details for all the samples that have been run through the step.

  4. Select Requeue to requeue samples as required.

Requeue a specific sample
  1. Select Sample from the drop-down list of search categories, type the sample name to search for, and press the Enter key.

  2. Expand the search results details to view all the steps performed on the sample and select Requeue to return the sample to the queue for the required step.

Reworking samples from a previous step

In addition to requeueing samples for the same step, you can also rework samples from a previous step. For example, an action is needed if there is an insufficient quantity of a particular sample to meet the required target concentration level.

Rework a sample when assigning next steps
  1. In the Assign Next Steps screen, select the next step drop-down list, select Rework from an earlier step.

  2. All the steps performed on the sample are listed, up to and including the current step. Select the required step and select OK.

    Clarity LIMS takes the upstream sample from the selected step and places it back in the queue for the selected step, so it can be reworked from that point in the workflow.

  3. The Rework from <step name> option is reflected in the next steps field.

  4. The sample no longer advances in the workflow, but the sample is now found in the queue for the selected rework step.

If a sample has been flagged for manager review, the manager can select Rework from an earlier step directly from the Review Samples screen.

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Last updated 9 months ago

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