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Installation

The Illumina NovaSeq X Series On-Prem Integration Package v1.1.0 supports the integration of Clarity LIMS to NovaSeq X Series instruments that are on-premise via Illumina Run Manager. Refer to NovaSeq X Series On-Prem Integration v1.1.0 User Interaction, Validation and Troubleshooting on prerequisites for installation.

Installation Steps

Steps:

  1. Install / Upgrade Clarity LIMS

  2. Install and Configure Illumina Run Manager Integration Service

  3. Install NovaSeq X Series On-Prem Integration RPM

  4. Install Illumina Preset Protocols (IPP) v2.12 RPM and Import Required IPP Workflows.

Step 1: Install / Upgrade Clarity LIMS

Install or upgrade to Clarity LIMS v6.2 or later. If you are using an older version of Clarity LIMS, please contact Illumina Support (techsupport@illumina.com) to schedule for upgrade.

Step 2: Install and Configure Illumina Run Manager Integration Service

Install and configure Illumina Run Manager Integration Service v1.1.0, please refer to Illumina Run Manager v1.1.0 Installation for details.

Step 3: Install NovaSeq X Series On-Prem Integration RPM

Install ClarityLIMS-NovaSeqXSeries-OnPremise RPM using yum or your preferred package manager.

Example with YUM:

Example with RPM:

Step 4: Install Illumina Preset Protocols (IPP) v2.12 and Import Required IPP Workflows

Install BaseSpaceLIMS-Illumina-Preset-Protocols RPM using yum or your preferred package manager.

Example with YUM:

Example with RPM:

Upon successful installation of IPP v2.12.0, install the following workflow configurations:

  • NovaSeq X Series On-Prem Sequencing v2.0 workflow

  • (Optional) Library Prep Validation v2.3.7 workflow

For detailed options and steps on how to install IPP workflows and protocols, see Installer Parameters and Operations section of Illumina Preset Protocols v2.12 Installation and User Configuration.

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