> For the complete documentation index, see [llms.txt](https://help.claritylims.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.claritylims.illumina.com/instruments-and-integrations/other-release-notes/nextseq550-v2.0.0-release-notes.md).

# NextSeq 500/550 v2.0.0

* **Updated configurable SampleSheet generation:** SampleSheet generation is now done using the updated **Template File Generator** tool, which enables updates of the provided template for SampleSheet generation in order to add additional headers and columns.
  * Template provided with accompanying configuration generates the BCL2Fastq SampleSheet with reverse complement.
  * When a new custom template is created, it can be uploaded using the Template File Management feature introduced in BaseSpace Clarity LIMS 5.1.
* **New delivery mechanism for NextSeq 2.0 Integration workflow configuration NextSeq 500/550 Workflow configuration** now delivered using a robust, **Preconfigured Workflow Package** installer.
  * Install history is recorded with version and install date information for better tracking and troubleshooting of installation.
* **Simplified Library Prep step for validation:** Single step mock library prep protocol included with configuration to facilitate quick validation of installed NextSeq 2.0 Sequencing Protocol.
* **Bugs resolved in this release:**
  * Updated the Sequencing Interops Metrics parser to record more accurate metrics using the same parsing libraries as the instrument and SAV.
  * Resolved issue Sequencing Step summary table with incorrect metrics calculated, by using the same parser as instrument.
  * Fixes of various internal automated test issues including smoketests.


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://help.claritylims.illumina.com/instruments-and-integrations/other-release-notes/nextseq550-v2.0.0-release-notes.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
