> For the complete documentation index, see [llms.txt](https://help.claritylims.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.claritylims.illumina.com/instruments-and-integrations/other-release-notes/novaseq6k-file-v2.1.0-release-notes.md).

# NovaSeq 6000 File-based v2.1.0

* BaseSpace Clarity LIMS v4.2 or later, though not compatible with v6.0 and later
* NGS Extensions Package v5.15 or later
* BaseSpaceLIMS-AutomationWorker 0.1.0 (LIMS v4.2) or v1.0 (LIMS v5.0)

## Illumina NovaSeq Software Compatibility: NovaSeq Control Software (NVCS) v1.2.0

## Features to note for this release

This release of the BaseSpace Clarity LIMS integration with the Illumina NovaSeq 6000 system is significant as it provides the following:

* An updated workflow with support for: S1, S2, and S4 flow cells per sample
  * Different applications on the same flow cell
  * Sample and reagent calculations based on flow cell
  * Underlying compatibility and logic for the upcoming single lane loader
* A run recipe (\*.json file) that interacts with the latest NovaSeq 6000 instrument software

## Known issues

There are no known issues for this release.


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://help.claritylims.illumina.com/instruments-and-integrations/other-release-notes/novaseq6k-file-v2.1.0-release-notes.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
