> For the complete documentation index, see [llms.txt](https://help.claritylims.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.claritylims.illumina.com/instruments-and-integrations/other-release-notes/novaseq6k-file-v2.2.1-release-notes.md).

# NovaSeq 6000 File-based v2.2.1

## Version: 2.2.1 Compatibility:

* BaseSpace Clarity LIMS v4.2 or later, though not compatible with v6.0 and later
* NGS Extensions Package v5.15 or later
* BaseSpaceLIMS-AutomationWorker 0.1.0 (LIMS v4.2) or v1.0 (LIMS v5.0)

## Illumina NovaSeq Software Compatibility: NovaSeq Control Software (NVCS) v1.3.0

## Features to note for this release. Maintains integrity of sample information throughout the workflow

* Now Support S1 in addition to S2, and S4 flow cells per sample

## Known issues

There are no known issues for this release.


---

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