Clarity LIMS
Illumina Connected Software
Clarity LIMS v6.3 & Lablink v2.5
Clarity LIMS v6.3 & Lablink v2.5
  • Release Notes Clarity LIMS v6.3
    • Release Notes Clarity LIMS v6.3.1
    • Release Notes Clarity LIMS v6.3.0
  • Technical Overview
    • Technical Requirements
  • Installation
    • Installation Procedure
    • Guide to Secret Management
    • Install/Upgrade Secret Management for Integration Modules
    • Change the Clarity LIMS Hostname
    • Update Server Passwords and Database Connection Details
  • On-Premise Deployments
    • Pre-installation Requirements
      • Install a Purchased SSL/TLS Certificate
      • Configure Your HashiCorp Vault
    • On Premise to On Premise Upgrade Procedures
    • On Premise to On Premise In-place Upgrade Procedures
    • On Premise to Hosted Upgrade Procedures
    • Hosted to On Premise Upgrade Procedures
  • Administration
    • Database Cleanup Procedure
    • Backup and Restore Procedure
    • Receiving and Decrypting Cloud Backup Data
    • LDAP Integration
      • Using the LDAP Checker Tool
    • Illumina Connected Software Platform Integration
    • Clarity LIMS Log Files
    • Customize the Term Used for Projects
    • Enforcing Unique Sample Names Within a Project
    • Container Name Uniqueness
    • Configure Electronic Signatures
    • Creating Enrypted Passwords
    • Config Slicer Tool
      • Managing Configurations with Config Slicer
      • Upgrading a configuration package/manifest file for compatibility with Config Slicer v3.0.x
      • Config Slicer Use Cases
      • Troubleshooting Config Slicer
    • Audit Trail
      • Enabling, Validating and Disabling Audit Trail
    • System Settings
    • Automation Worker Nodes
      • Troubleshooting Automation Worker
  • Clarity LIMS v6.3 Reference Guide
    • Dashboards
      • Overview Dashboard
      • Projects Dashboard
    • Projects and Samples
      • Projects
      • Samples Accessioning
        • Sample List for Batch Import
        • Guidelines and Tips for Batch Sample Import
      • Assign and Process Samples
    • Lab View
      • Requeue and Rework Samples
      • Storing Sample Aliquots for Later Use
      • Modifying Completed Step Details
      • Alert Notifications
    • Configuration
      • Lab Work
        • Steps and Master Steps
          • Step Milestones
          • Derived Sample Naming Convention Tokens
        • Protocols
        • Workflows
      • Consumables
        • Reagents
          • Reagent Kit Lot Manifest for Batch Import
        • Controls
        • Instruments
        • Labels
        • Containers
      • Custom Fields
      • User Management
        • Manage User Access
        • User Roles
        • Configured Role-Based Permissions
        • User and Profile Page
      • Automations
        • Automation Trigger Configuration
        • Copy Custom Fields from Step Input to Output
        • Template Files Associated With Automations
    • Automated Quality Control
      • Configure a QC System
    • Search
      • Basic Search
      • Advanced Search
    • Genealogy View
    • System Performance
      • Queue Performance and Usability
      • Demultiplexing API Endpoint Performance
    • Terms and Definitions
  • LabLink v2.5 Reference Guide
    • Project
      • Email Notifications for Notes
    • Resource Materials & Contact Us
    • Users
    • Configuration
    • Publishing Files and Progress
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  • Create Projects
  • View and Modify Projects
  • View, Modify and Delete a Project
  • View and Modify Project Status
  • View and Modify Custom Fields
  • Download / Upload Files
  • Project Automation

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  1. Clarity LIMS v6.3 Reference Guide
  2. Projects and Samples

Projects

Projects section of the Clarity LIMS Documentation discuss how to create and work with projects.

Clarity LIMS uses projects as the basis for all work performed in the system. All samples must be added to an existing project.

A project stores the following information:

  • The client and account associated with the project.

  • The priority of the project (Low, Standard, High).

  • The samples submitted to the project.

  • Project status (Pending, Open, Closed).

  • The date the project was opened and closed.

  • Files associated with the project.

  • Any configured custom fields.

Create Projects

Before adding samples to Clarity LIMS, create a project to store them.

By default, you can create projects. However, this role-based permission is configurable. For details, see Configured Role-Based Permissions.

  1. On the Projects and Samples tab, select New Project.

  2. On the Properties tab, in the Project Details section, complete the following tasks:

    • Type a descriptive name for the project.

    • If creating a new account, type the name directly into the field. Otherwise, select an existing account from the drop-down list.

    • If creating a new client, type the name directly into the field. Otherwise, select an existing client from the drop-down list.

    • By default, the project opened date is set to the current date. To change this date, select the Opened field and select a date from the calendar.

    • If necessary, edit the project priority. The default is Standard.

  3. On the Custom Fields tab, complete the additional details for this project. Mandatory fields are indicated with yellow shading.

  4. [Optional] To upload a file to the project:

    • Select the Files tab, then select Upload File.

    • Select Choose File, browse for and select the file, and select Upload.

  5. Select Save. The new project displays in the Projects list. Samples can now be added.

View and Modify Projects

View, Modify and Delete a Project

To view, modify, or delete a project, complete the following steps:

  1. Navigate to the Projects and Samples tab.

  2. In the Projects list, select the project. The Project Details screen displays the details for the selected project.

  3. To modify project details, select the field and edit as required (see Project Creation).

  4. Select Save.

  5. To delete the project, select Delete.

Before deleting a project, consider the following details:

  • Deleting a project also deletes any samples it contains.

  • By default, projects can be deleted provided no work has been recorded (or is in progress) on the samples. However, this role-based permission is configurable.

  • If the samples contained in a project have recorded or in-progress protocol steps, the project cannot be deleted without special user permissions.

For information on role-based permissions, see Configured Role-Based Permissions.

View and Modify Project Status

To view and update the project status, complete the following steps:

  1. Navigate to the Projects and Samples tab.

  2. In the Projects list, select a project.

    On the Properties tab in the Project Details area, the Status slider indicates the status of the project.

  3. To move the slider and change the project status, select the desired status.

View and Modify Custom Fields

To view and modify custom fields, complete the following steps:

  1. Navigate to the Projects and Samples tab.

  2. In the Projects list, select a project.

  3. In the Project Details area, navigate to the Custom Fields tab.

  4. Select a field to modify and edit as required.

  5. Select Save.

Download / Upload Files

To download, view, and upload project files, complete the following steps:

  1. Navigate to the Projects and Samples tab.

  2. In the Projects list, select a project.

  3. In the Project Details area, navigate to the Files tab. Files currently associated with the project are displayed.

  4. To download and view a project file, select the file.

  5. To upload a file:

    a. Select Upload File.

    b. Select Choose File.

    c. Browse for the file, select it, and select Upload.

Project Automation

See Project Automation on how to configure Project Automation.

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Last updated 9 months ago

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