Compatibility

Last Updated: July 2024

Terminology

IPP = Illumina Preset Protocol
CSW = Control Software
OSW = Operating Software

Instrument Integrations

iScan

Module = BaseSpaceLIMS-SIS-iScan

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.2.0

Multiple (iLASS Infinium v1.1)

6.2.0 and above

CSW 4.2.1
IPP 2.9.0 and above
SIS Core 2.4.0

1.1.0¹

Multiple (iLASS Infinium v1.0)

6.2.0 and above

CSW 4.2.1
IPP 2.6.0 and above
SIS Core 2.4.0

¹ ⚠️ For fresh install with CLIMS v6.3.0, configure_iscan.sh must be updated to remove IFS='\n\t'

MiSeq

Module = ClarityLIMS-Illumina-MiSeq-Package-v8

Version

Workflow version

Clarity LIMS version

Other Compatibilities

8.3.0

3.2

6.2.0 and above

CSW 4.0.0, 4.1.0
IPP 2.6.0 and above

8.2.0

3.2

6.2.0 only

CSW 4.0.0, 4.1.0
IPP 2.9.0 and above

MiSeqDx

Module = BaseSpaceLIMS-miseqdx-sequencing-service, BaseSpaceLIMS-miseqdx-extensions

ℹ️ Workflow is part of extensions RPM.

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.11.0

1.2

6.2.0 and above

OS 1.1.7
NGS 5.23.0

1.10.0

1.2

6.2.0 only

OS 1.1.7
NGS 5.23.0

NextSeq 500/550

Module = ClarityLIMS-Illumina-NextSeq-Package-v2

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.4.0

1.1

6.2.0 and above

CSW 4.0.0
IPP 2.6.0 and above

2.3.0

1.1

6.2.0 only

CSW 4.0.0
IPP 2.6.0 and above

NextSeq 1000/2000

Hosted

Module = BaseSpaceLIMS-SIS-Nextseq1k2k

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.5.1

2.4

6.2.0 and above

CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.8.0 and above
SIS Core 2.6.0
(Optional) UPA and UPA Script 1.3.1

2.5.0

2.4

6.2.0 and above

CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.8.0 and above
SIS Core 2.6.0
(Optional) UPA and UPA Script 1.2.0

2.4.0¹

2.3

6.2.0 and above

CSW 1.5.0
Requires BSSH (Personal/Professional/Enterprise)
IPP 2.6.0 and above
SIS Core 2.4.0
(Optional) UPA and UPA Script 1.2.0

¹ ⚠️ For fresh install with CLIMS v6.3.0, configure_nextseq1k2k.sh must be updated to remove IFS='\n\t'

On-Prem

Module = BaseSpaceLIMS-SIS-Nextseq1k2k-OnPremise

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.0.0

1.0

6.2.0 and above

IPP 2.8.0 and above
CSW 1.5.0

NovaSeq 6000

API-based

Module = BaseSpaceLIMS-sequencer-api

Version

Workflow version

Clarity LIMS version

Other Compatibilities

3.7.0

3.8

6.2.0 and above

CSW 1.8.0
IPP 2.6.0 and above
Sequencer API 2.7.0
(Optional) UPA and UPA Script 1.2.0

3.6.0

3.8

6.2.0 and above

CSW 1.8.0
IPP 2.6.0 and above
Sequencer API 2.6.0
(Optional) UPA and UPA Script 1.2.0

File-based

Module = BaseSpaceLIMS-novaseq-sequencing-service, BaseSpaceLIMS-novaseq-extensions

ℹ️ Workflow is part of extensions RPM.

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.6.0

2.3

6.2.0 and above

CSW 1.5.0
NGS 5.23.0

2.5.0

2.3

6.2.0 only

CSW 1.5.0
NGS 5.23.0

NovaSeq 6000Dx

Module = BaseSpaceLIMS-sequencer-api

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.3.0

1.2

6.2.0 and above

OS 2.3.1
IPP 2.6.0 and above
Sequencer API 2.7.0

1.2.0

1.2

6.2.0 and above

OS 2.3.1
IPP 2.6.0 and above
Sequencer API 2.6.0

NovaSeq X Series

Module = BaseSpaceLIMS-SIS-NovaSeqXSeries

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.2.1¹

1.1

6.2.0 and above

CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.7.0 and above
SIS Core 2.5.0
(Optional) UPA and UPA Script 1.3.1

1.2.0¹

1.1

6.2.0 and above

CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.7.0 and above
SIS Core 2.5.0
(Optional) UPA 1.2.0 and UPA Script 1.2.1
x

1.1.0¹

1.1

6.2.0

CSW 1.0.0
Requires BSSH (Professional/Enterprise)
IPP 2.6.0 and above
SIS Core 2.4.0
(Optional) UPA and UPA Script 1.2.0

¹ ⚠️ For fresh install with CLIMS v6.3.0, configure_novaseqxseries.sh must be updated to remove IFS='\n\t'

Other Integration Modules

Illumina Preset Protocol

Module = BaseSpaceLIMS-Illumina-Preset-Protocols

Version

Clarity LIMS version

Other Compatibilities

2.9.0

6.2.0 and above

NGS 5.25.0

2.8.0

6.2.0 and above

NGS 5.25.0

2.7.0

6.2.0 and above

NGS 5.24.0

2.6.0

6.2.0 and above

NGS 5.23.0

NGS Extension

Module = Clarity LIMS-NGS-Package-v5

Version

Clarity LIMS version

Other Compatibilities

5.25.0

6.2.0 and above

5.24.0

6.2.0 and above

5.23.0

6.2.0 and above

Sequencer-API

Module = BaseSpaceLIMS-sequencer-api

Version

Clarity LIMS version

Other Compatibilities

2.7.0

6.2.0 and above

2.6.0

6.2.0 and above

SIS-Core

Module = BaseSpaceLIMS-SIS-Core

Version

CLIMS version

Other Compatibilities

2.6.0

6.2.0 and above

2.5.0

6.2.0 and above

2.4.0

6.2.0 and above

UPA

UPA

Module = BaseSpaceLIMS-unified-product-analytics

Version

CLIMS version

Other Compatibilities

1.3.1

6.2.0 and above

1.3.0¹

6.2.0 and above

1.2.0¹

6.2.0 and above

¹ ⚠️ For fresh install with CLIMS v6.3.0, configure_upa.sh must be updated to remove IFS='\n\t'

UPA Script

Module = BaseSpaceLIMS-unified-product-analytics-scripts

Version

CLIMS version

Other Compatibilities

1.3.1

6.2.0 and above

UPA v1.3.0

1.3.0

6.2.0 and above

UPA v1.3.0

1.2.1

6.2.0 and above

UPA v1.2.0

1.2.0

6.2.0 and above

UPA v1.2.0

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