Compatibility

Last Updated: July 2024

Terminology

  • IPP = Illumina Preset Protocol

  • CSW = Control Software

  • OSW = Operating Software

Instrument Integrations

iScan

  • Module = BaseSpaceLIMS-SIS-iScan

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.2.0

Multiple (iLASS Infinium v1.1)

6.2.0 and above

  • CSW 4.2.1

  • IPP 2.9.0 and above

  • SIS Core 2.4.0

1.1.0¹

Multiple (iLASS Infinium v1.0)

6.2.0 and above

  • CSW 4.2.1

  • IPP 2.6.0 and above

  • SIS Core 2.4.0

¹ ⚠️ For fresh install with CLIMS v6.3.0, configure_iscan.sh must be updated to remove IFS='\n\t'

MiSeq

  • Module = ClarityLIMS-Illumina-MiSeq-Package-v8

Version

Workflow version

Clarity LIMS version

Other Compatibilities

8.3.0

3.2

6.2.0 and above

  • CSW 4.0.0, 4.1.0

  • IPP 2.6.0 and above

8.2.0

3.2

6.2.0 only

  • CSW 4.0.0, 4.1.0

  • IPP 2.9.0 and above

MiSeqDx

  • Module = BaseSpaceLIMS-miseqdx-sequencing-service, BaseSpaceLIMS-miseqdx-extensions

ℹ️ Workflow is part of extensions RPM.

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.11.0

1.2

6.2.0 and above

  • OS 1.1.7

  • NGS 5.23.0

1.10.0

1.2

6.2.0 only

  • OS 1.1.7

  • NGS 5.23.0

NextSeq 500/550

  • Module = ClarityLIMS-Illumina-NextSeq-Package-v2

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.4.0

1.1

6.2.0 and above

  • CSW 4.0.0

  • IPP 2.6.0 and above

2.3.0

1.1

6.2.0 only

  • CSW 4.0.0

  • IPP 2.6.0 and above

NextSeq 1000/2000

Hosted

  • Module = BaseSpaceLIMS-SIS-Nextseq1k2k

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.5.1

2.4

6.2.0 and above

  • CSW 1.5.0

  • Requires BSSH (Personal/Professional/Enterprise)

  • IPP 2.8.0 and above

  • SIS Core 2.6.0

  • (Optional) UPA and UPA Script 1.3.1

2.5.0

2.4

6.2.0 and above

  • CSW 1.5.0

  • Requires BSSH (Personal/Professional/Enterprise)

  • IPP 2.8.0 and above

  • SIS Core 2.6.0

  • (Optional) UPA and UPA Script 1.2.0

2.4.0¹

2.3

6.2.0 and above

  • CSW 1.5.0

  • Requires BSSH (Personal/Professional/Enterprise)

  • IPP 2.6.0 and above

  • SIS Core 2.4.0

  • (Optional) UPA and UPA Script 1.2.0

¹ ⚠️ For fresh install with CLIMS v6.3.0, configure_nextseq1k2k.sh must be updated to remove IFS='\n\t'

On-Prem

  • Module = BaseSpaceLIMS-SIS-Nextseq1k2k-OnPremise

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.0.0

1.0

6.2.0 and above

  • IPP 2.8.0 and above

  • CSW 1.5.0

NovaSeq 6000

API-based

  • Module = BaseSpaceLIMS-sequencer-api

Version

Workflow version

Clarity LIMS version

Other Compatibilities

3.7.0

3.8

6.2.0 and above

  • CSW 1.8.0

  • IPP 2.6.0 and above

  • Sequencer API 2.7.0

  • (Optional) UPA and UPA Script 1.2.0

3.6.0

3.8

6.2.0 and above

  • CSW 1.8.0

  • IPP 2.6.0 and above

  • Sequencer API 2.6.0

  • (Optional) UPA and UPA Script 1.2.0

File-based

  • Module = BaseSpaceLIMS-novaseq-sequencing-service, BaseSpaceLIMS-novaseq-extensions

ℹ️ Workflow is part of extensions RPM.

Version

Workflow version

Clarity LIMS version

Other Compatibilities

2.6.0

2.3

6.2.0 and above

  • CSW 1.5.0

  • NGS 5.23.0

2.5.0

2.3

6.2.0 only

  • CSW 1.5.0

  • NGS 5.23.0

NovaSeq 6000Dx

  • Module = BaseSpaceLIMS-sequencer-api

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.3.0

1.2

6.2.0 and above

  • OS 2.3.1

  • IPP 2.6.0 and above

  • Sequencer API 2.7.0

1.2.0

1.2

6.2.0 and above

  • OS 2.3.1

  • IPP 2.6.0 and above

  • Sequencer API 2.6.0

NovaSeq X Series

  • Module = BaseSpaceLIMS-SIS-NovaSeqXSeries

Version

Workflow version

Clarity LIMS version

Other Compatibilities

1.2.1¹

1.1

6.2.0 and above

  • CSW 1.0.0

  • Requires BSSH (Professional/Enterprise)

  • IPP 2.7.0 and above

  • SIS Core 2.5.0

  • (Optional) UPA and UPA Script 1.3.1

1.2.0¹

1.1

6.2.0 and above

  • CSW 1.0.0

  • Requires BSSH (Professional/Enterprise)

  • IPP 2.7.0 and above

  • SIS Core 2.5.0

  • (Optional) UPA 1.2.0 and UPA Script 1.2.1

  • x

1.1.0¹

1.1

6.2.0

  • CSW 1.0.0

  • Requires BSSH (Professional/Enterprise)

  • IPP 2.6.0 and above

  • SIS Core 2.4.0

  • (Optional) UPA and UPA Script 1.2.0

¹ ⚠️ For fresh install with CLIMS v6.3.0, configure_novaseqxseries.sh must be updated to remove IFS='\n\t'

Other Integration Modules

Illumina Preset Protocol

  • Module = BaseSpaceLIMS-Illumina-Preset-Protocols

Version

Clarity LIMS version

Other Compatibilities

2.9.0

6.2.0 and above

NGS 5.25.0

2.8.0

6.2.0 and above

NGS 5.25.0

2.7.0

6.2.0 and above

NGS 5.24.0

2.6.0

6.2.0 and above

NGS 5.23.0

NGS Extension

  • Module = Clarity LIMS-NGS-Package-v5

Version

Clarity LIMS version

Other Compatibilities

5.25.0

6.2.0 and above

5.24.0

6.2.0 and above

5.23.0

6.2.0 and above

Sequencer-API

  • Module = BaseSpaceLIMS-sequencer-api

Version

Clarity LIMS version

Other Compatibilities

2.7.0

6.2.0 and above

2.6.0

6.2.0 and above

SIS-Core

  • Module = BaseSpaceLIMS-SIS-Core

Version

CLIMS version

Other Compatibilities

2.6.0

6.2.0 and above

2.5.0

6.2.0 and above

2.4.0

6.2.0 and above

UPA

UPA

  • Module = BaseSpaceLIMS-unified-product-analytics

Version

CLIMS version

Other Compatibilities

1.3.1

6.2.0 and above

1.3.0¹

6.2.0 and above

1.2.0¹

6.2.0 and above

¹ ⚠️ For fresh install with CLIMS v6.3.0, configure_upa.sh must be updated to remove IFS='\n\t'

UPA Script

  • Module = BaseSpaceLIMS-unified-product-analytics-scripts

Version

CLIMS version

Other Compatibilities

1.3.1

6.2.0 and above

UPA v1.3.0

1.3.0

6.2.0 and above

UPA v1.3.0

1.2.1

6.2.0 and above

UPA v1.2.0

1.2.0

6.2.0 and above

UPA v1.2.0

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