Supported Workflows

Last Updated: July 2024

Clarity LIMS Product Analytics supports the workflows listed in the following table.

All workflows are provided as a configuration slice outside of the IPP installation.

Supported Workflows

Software/Workflow	Version
ClarityLIMS-App	v6.0 and later¹
Illumina-Preset-Protocols	v2.3 and later
NovaSeq X Series workflow	v1.0², v1.1², and v1.2³
NovaSeq 6000 v3 workflow	v3.4⁴, v3.6⁴, v3.8, and later
NextSeq 1000/2000 workflow	v2.2⁴, v2.3⁵, v2.4 and later⁶
Library Prep Validation	v2.0.5⁴, v2.3.1, and later

¹ The integration supports on-premise or hosted installations. The on-premise support is only available to the NovaSeq 6000 v3 workflow. The NextSeq 1000/2000 and NovaSeq X Series workflows support only hosted installations. Clarity LIMS v6.2 discontinues support for CentOS and instead supports Oracle Linux as the superseding operating system.

² The NovaSeq X Series v1.0.0 and v1.1.0 integrations is only compatible with BaseSpaceLIMS-unified-product-analytics-scripts v1.2.0.

³ The NovaSeq X Series v1.2.0 integration requires BaseSpaceLIMS-unified-product-analytics-scripts v1.2.1 and later.

⁴ The CLPA enabled workflows are provided as separate configuration slices outside of the IPP installation.

⁵ Requires CLPA v1.2.0 or earlier.

⁶ Requires CLPA v1.3.0 or later due to updates to the nextseq1k2k_analysisrun_completed.groovy script.

Known Issues

• UPA payload generation at pooling step and sequencing step will fail if any of the samples in the pools has been assigned QC flag in prior steps before entering these steps for UPA Scripts v1.2.0, v1.2.1 and v1.3.0.