Supported Workflows
Last Updated: July 2024
Clarity LIMS Product Analytics supports the workflows listed in the following table.
All workflows are provided as a configuration slice outside of the IPP installation.
Supported Workflows
Software/Workflow | Version |
ClarityLIMS-App | v6.0 and later¹ |
Illumina-Preset-Protocols | v2.3 and later |
NovaSeq X Series workflow | v1.0², v1.1², and v1.2³ |
NovaSeq 6000 v3 workflow | v3.4⁴, v3.6⁴, v3.8, and later |
NextSeq 1000/2000 workflow | v2.2⁴, v2.3⁵, v2.4 and later⁶ |
Library Prep Validation | v2.0.5⁴, v2.3.1, and later |
¹ The integration supports on-premise or hosted installations. The on-premise support is only available to the NovaSeq 6000 v3 workflow. The NextSeq 1000/2000 and NovaSeq X Series workflows support only hosted installations. Clarity LIMS v6.2 discontinues support for CentOS and instead supports Oracle Linux as the superseding operating system.
² The NovaSeq X Series v1.0.0 and v1.1.0 integrations is only compatible with BaseSpaceLIMS-unified-product-analytics-scripts v1.2.0.
³ The NovaSeq X Series v1.2.0 integration requires BaseSpaceLIMS-unified-product-analytics-scripts v1.2.1 and later.
⁴ The CLPA enabled workflows are provided as separate configuration slices outside of the IPP installation.
⁵ Requires CLPA v1.2.0 or earlier.
⁶ Requires CLPA v1.3.0 or later due to updates to the nextseq1k2k_analysisrun_completed.groovy script.
Known Issues
UPA payload generation at pooling step and sequencing step will fail if any of the samples in the pools has been assigned QC flag in prior steps before entering these steps for UPA Scripts v1.2.0, v1.2.1 and v1.3.0.
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