Configuration

The Clarity LIMS Product Analytics Integration v1.3.1 allows you to aggregate and analyze lab data from the workflow in a single location. Data is uploaded to the Illumina Connected Analytics (ICA) service.

⚠️ Refer to individual integration package requirement on enabling UPA. Note that ICA subscription is only required to view data on ICA UI.

Clarity LIMS Product Analytics Integration v1.3.1 includes the following changes:

• The novaseqxseries_associate_seqrun.groovy and nextseq1k2k_associate_seqrun.groovy scripts can now associate libraries to sequencing run when any sample in the pool(s) has been assigned QC flags prior to entering the AUTOMATED - Sequencing Run step in the workflow.

• The pooling.groovy script no longer fails when any samples in the pool(s) has been assigned QC flags prior to entering pooling steps in the workflow.

This integration also supports the following workflows:

• NovaSeq 6000 v3

• NextSeq 1000/2000

• NovaSeq X Series

• Library Prep Validation

Other workflows can be customized to add Clarity LIMS Product Analytics integration capabilities. For more information, refer to Automation and Workflow Customization.

Supported Workflows

Clarity LIMS Product Analytics Integration v1.3.1 supports the applicable workflows identified in Supported Workflows. These workflows require this integration due to fixes that supports CLPA generation of payload (for pooling step) and association of library to sequencing run when samples go through QC step in workflow:

• NextSeq 1000/2000 Sequencing v2.4 workflow and later

• NovaSeq X Series Sequencing v1.1 workflow and later

Components

Clarity LIMS Product Analytics Integration v1.3.1 includes the following required components:

• BaseSpaceLIMS-unified-products-analytics — The core service of the Clarity LIMS Product Analytics Integration. This service installs the daemon service that publishes messages to the product analytics through the ICA service.

• BaseSpaceLIMS-unified-products-analytics-scripts — The automation scripts of the Clarity LIMS Product Analytics Integration. If new workflows or new product analytics scripts are introduced, this component can be upgraded.

Automation Scripts

The automation scripts are installed through the BaseSpaceLIMS-unified-products-analytics-scripts RPM. These scripts process Clarity LIMS data and prepare data for upload to the ICA service. There are two types of CLPA scripts: common and workflow-specific. The installed scripts are the same as that of Clarity LIMS Product Analytics Integration v1.3.0