Release Notes

Last Updated: July 2024

Release Date: September 2023

These release notes describe the key changes to software components for the Clarity LIMS NovaSeq X Series Integration Package v1.1.0.

Compatibility

This version of the integration package is compatible with the following software:

  • Clarity LIMS v6.2.0 and later

  • NGS Extensions Package v5.23 and later

  • Illumina Preset Protocols (IPP) v2.6.0 and later

  • NovaSeq X Series Control Software v1.0.0

New Features

  • Updated Java and third-party dependency libraries.

  • Updated Groovy to v3.0.7.

Defects Fixed

  • Restricted the scope for the JWT token used in the integration.

  • Fixed issue where the SIS core service was not properly registered in systemctl.

Known Limitations

  • This integration does not track the analysis step. You must log in to BSSH to view the cloud analysis status and results. For local analysis, the secondary analysis results are located in the external storage configured in Illumina Run Manager.

  • The Local run mode does not support custom library prep and index adapter kits.

  • The Analysis Configuration Template (ACT) names must be unique.

Known Issues

  • On the Make Bulk Pool step, the log displays a warning when the Calculate Volume automation is triggered and at least one pool consists of multiple inputs. This issue is caused by the output custom field being reset multiple times at the end of the automation. This issue does not affect the Calculate Volume automation functionality.

  • Sample sheet and planned run generation will fail if any of the samples in the pools has been assigned QC flag in prior steps before entering the Load to Library Tube Strip step.

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